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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Benito Santiago | 22nd | Tied for 1st | 22nd | |
| First Basemen | Fred McGriff | 22nd | Tied for 7th | 22nd | |
| Second Basemen | Mark Loretta | 23rd | Tied for 10th | 24th | |
| Third Basemen | Manny Machado | 5th | Tied for 14th | 13th | |
| Shortstops | Garry Templeton | 13th | Khalil Greene | 7th | 9th |
| Left Fielders | Tony Gwynn Sr | 8th | Gene Richards | 2nd | 3rd |
| Center Fielders | Dave Winfield | 19th | Tied for 10th | 21st | |
| Right Fielders | Fernando Tatis Jr. | 2nd | Tied for 10th | 5th | |
| Starting Pitchers | Randy Jones | 24th | Clay Kirby | 7th | 16th |
| Relievers | Luke Gregerson | 17th | Luis DeLeon | 16th | 14th |
| Closers | Trevor Hoffman | 10th | Luis DeLeon | Tied for 2nd | 3rd |
